Silvia (Shuchang) Liu, PhD*
S406 Biomedical Science Tower
200 Lothrop Street
Pittsburgh, PA 15261
- High throughput genomic data analysis by machine learning and statistical methods
Clustering, classification, bi-clustering, meta-analysis, omics data analysis, linear models, regression, probability theory, gene regulation, data preprocessing, feature selection, dimension reduction, biomarker detection, pathway analysis, differential expression analysis, microarray (mRNA, SNP, etc) data analysis, clinical/survival data analysis
- Next Generation Sequencing (NGS) and Long-read Sequencing data analysis
Transcriptome sequencing (RNA-Seq), whole genome sequencing (WGS), whole exome sequencing (WES), Chip-Seq, long-read sequencing, quality control (QC), trimming, alignment, fusion gene detection, gene expression, structural variation (SV) detection, copy number variation (CNV) analysis, SNP calling, peak calling, isoform analysis, etc.
View Dr. Liu’s publications on PubMed
I’m actively looking for collaborations. My current collaborations in liver research majorly focused on genomic data analysis to explore the HCC recurring mechanism and the process of tumorigenesis. I’ve set up collaborations with Dr. George Michalopoulos, Dr. Paul Monga, Dr. Jianhua Luo, Dr. Kari Nejak-Bowen, Dr. Hossam Abdelsamed, Dr. Alejandro Soto-Gutierrez, Dr. Bokai Zhu, Dr. Qingde Wang, Dr. Mo Ebrahimkhani, Dr. Matthew Steinhauser, Dr. Reben Raeman, Dr. Sadeesh Ramakrishnan, Dr. Tirthadipa Pradhan-Sundd and many other collaborators in the liver center.
I’m serving as core manager for the Genomics and Systems Biology core of the liver center. I’m glad to provide bioinformatics and biostatistics analysis on the genomic data.
PLRC Genomics and Systems Biology Core Manager
Department of Pathology